ElementFile.h File Reference

#include "Dudley.h"
#include "NodeFile.h"
#include "ElementType.h"
#include "escript/DataC.h"
#include "NodeFile.h"

Go to the source code of this file.

Classes
struct	Dudley_ElementFile_Jacobeans
struct	Dudley_ElementFile
Typedefs
typedef struct Dudley_ElementFile	Dudley_ElementFile
Functions
Dudley_ElementFile *	Dudley_ElementFile_alloc (Dudley_ElementTypeId etype, Esys_MPIInfo *MPIInfo)
void	Dudley_ElementFile_free (Dudley_ElementFile *)
void	Dudley_ElementFile_allocTable (Dudley_ElementFile *, dim_t)
void	Dudley_ElementFile_freeTable (Dudley_ElementFile *)
void	Dudley_ElementFile_setElementDistribution (Dudley_ElementFile *in, dim_t *distribution)
dim_t	Dudley_ElementFile_getGlobalNumElements (Dudley_ElementFile *in)
dim_t	Dudley_ElementFile_getMyNumElements (Dudley_ElementFile *in)
index_t	Dudley_ElementFile_getFirstElement (Dudley_ElementFile *in)
void	Dudley_ElementFile_distributeByRankOfDOF (Dudley_ElementFile *self, Esys_MPI_rank *mpiRankOfDOF, index_t *Id)
void	Dudley_ElementFile_createColoring (Dudley_ElementFile *in, dim_t numNodes, dim_t *degreeOfFreedom)
void	Dudley_ElementFile_optimizeOrdering (Dudley_ElementFile **in)
void	Dudley_ElementFile_setNodeRange (dim_t *, dim_t *, Dudley_ElementFile *)
void	Dudley_ElementFile_relableNodes (dim_t *, dim_t, Dudley_ElementFile *)
void	Dudley_ElementFile_markNodes (dim_t *, dim_t, dim_t, Dudley_ElementFile *, dim_t)
void	Dudley_ElementFile_scatter (dim_t *, Dudley_ElementFile *, Dudley_ElementFile *)
void	Dudley_ElementFile_gather (dim_t *, Dudley_ElementFile *, Dudley_ElementFile *)
void	Dudley_ElementFile_copyTable (dim_t, Dudley_ElementFile *, dim_t, dim_t, Dudley_ElementFile *)
void	Dudley_ElementFile_markDOFsConnectedToRange (index_t *mask, index_t offset, index_t marker, index_t firstDOF, index_t lastDOF, index_t *dofIndex, Dudley_ElementFile *in, bool_t useLinear)
void	Dudley_ElementFile_setTags (Dudley_ElementFile *, const int, escriptDataC *)
Dudley_ElementFile_Jacobeans *	Dudley_ElementFile_Jacobeans_alloc (void)
void	Dudley_ElementFile_Jacobeans_dealloc (Dudley_ElementFile_Jacobeans *)
Dudley_ElementFile_Jacobeans *	Dudley_ElementFile_borrowJacobeans (Dudley_ElementFile *, Dudley_NodeFile *, bool_t)
void	Dudley_ElementFile_setTagsInUse (Dudley_ElementFile *in)

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Typedef Documentation

typedef struct Dudley_ElementFile Dudley_ElementFile

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Function Documentation

Dudley_ElementFile* Dudley_ElementFile_alloc	(	Dudley_ElementTypeId	etype,
		Esys_MPIInfo *	MPIInfo
	)

References Dudley_ElementFile::Color, Dims, Dudley_checkPtr(), Dudley_ElementFile_free(), Dudley_ElementFile_Jacobeans_alloc(), Dudley_noError(), Dudley_ElementFile::ename, Esys_MPIInfo_getReference(), Dudley_ElementFile::etype, getElementName(), Dudley_ElementFile::Id, Dudley_ElementFile::jacobeans, Dudley_ElementFile::jacobeans_reducedQ, localDims, Dudley_ElementFile::maxColor, MEMALLOC, Dudley_ElementFile::minColor, Dudley_ElementFile::MPIInfo, Dudley_ElementFile::Nodes, Dudley_ElementFile::numDim, Dudley_ElementFile::numElements, Dudley_ElementFile::numLocalDim, Dudley_ElementFile::numNodes, Dudley_ElementFile::numShapes, Dudley_ElementFile::numTagsInUse, Dudley_ElementFile::Owner, Dudley_ElementFile::Tag, and Dudley_ElementFile::tagsInUse.

Referenced by Dudley_ElementFile_optimizeOrdering(), Dudley_Mesh_read(), Dudley_Mesh_readGmsh(), Dudley_TriangularMesh_Tet4(), and Dudley_TriangularMesh_Tri3().

void Dudley_ElementFile_allocTable	(	Dudley_ElementFile *	,
		dim_t
	)

References Dudley_ElementFile::Color, Dudley_checkPtr(), Dudley_ElementFile_freeTable(), Dudley_resetError(), Dudley_ElementFile::Id, INDEX2, Dudley_ElementFile::maxColor, MEMALLOC, MEMFREE, Dudley_ElementFile::minColor, Dudley_ElementFile::Nodes, Dudley_ElementFile::numElements, Dudley_ElementFile::numNodes, Finley_ElementFile::numNodes, Dudley_ElementFile::Owner, and Dudley_ElementFile::Tag.

Referenced by Dudley_ElementFile_distributeByRankOfDOF(), Dudley_ElementFile_optimizeOrdering(), Dudley_Mesh_read(), Dudley_Mesh_readGmsh(), Dudley_TriangularMesh_Tet4(), and Dudley_TriangularMesh_Tri3().

Dudley_ElementFile_Jacobeans* Dudley_ElementFile_borrowJacobeans	(	Dudley_ElementFile *	,
		Dudley_NodeFile *	,
		bool_t
	)

References Dudley_ElementFile_Jacobeans::absD, Dudley_NodeFile::Coordinates, Dudley_ElementFile_Jacobeans::DSDX, Dudley_Assemble_jacobeans_2D(), Dudley_Assemble_jacobeans_2D_M1D_E1D(), Dudley_Assemble_jacobeans_3D(), Dudley_Assemble_jacobeans_3D_M2D_E2D(), Dudley_checkPtr(), Dudley_noError(), Dudley_setError(), MEMALLOC, Dudley_NodeFile::numDim, Dudley_ElementFile_Jacobeans::numDim, Dudley_ElementFile_Jacobeans::numElements, Finley_ElementFile::numNodes, Dudley_ElementFile_Jacobeans::numQuad, Dudley_ElementFile_Jacobeans::numShapes, QuadNums, Dudley_ElementFile_Jacobeans::quadweight, Dudley_NodeFile::status, Dudley_ElementFile_Jacobeans::status, and SYSTEM_ERROR.

Referenced by Dudley_Assemble_getAssembleParameters(), Dudley_Assemble_gradient(), and Dudley_Assemble_integrate().

void Dudley_ElementFile_copyTable	(	dim_t	,
		Dudley_ElementFile *	,
		dim_t	,
		dim_t	,
		Dudley_ElementFile *
	)

void Dudley_ElementFile_createColoring	(	Dudley_ElementFile *	in,
		dim_t	numNodes,
		dim_t *	degreeOfFreedom
	)

Referenced by Dudley_Mesh_createColoring().

void Dudley_ElementFile_distributeByRankOfDOF	(	Dudley_ElementFile *	self,
		Esys_MPI_rank *	mpiRankOfDOF,
		index_t *	Id
	)

References Dudley_checkPtr(), Dudley_ElementFile_allocTable(), INDEX2, MPI_INT, Finley_ElementFile::numNodes, THREAD_MEMALLOC, THREAD_MEMFREE, TMPMEMALLOC, TMPMEMFREE, and TRUE.

Referenced by Dudley_Mesh_distributeByRankOfDOF().

void Dudley_ElementFile_free

(

Dudley_ElementFile *

)

References Dudley_ElementFile_freeTable(), Dudley_ElementFile_Jacobeans_dealloc(), Esys_MPIInfo_free(), Dudley_ElementFile::jacobeans, Dudley_ElementFile::jacobeans_reducedQ, MEMFREE, and Dudley_ElementFile::MPIInfo.

Referenced by Dudley_ElementFile_alloc(), Dudley_ElementFile_optimizeOrdering(), Dudley_Mesh_free(), Dudley_Mesh_setElements(), Dudley_Mesh_setFaceElements(), and Dudley_Mesh_setPoints().

void Dudley_ElementFile_freeTable

(

Dudley_ElementFile *

)

References Dudley_ElementFile::Color, Dudley_ElementFile::Id, Dudley_ElementFile::maxColor, MEMFREE, Dudley_ElementFile::minColor, Dudley_ElementFile::Nodes, Dudley_ElementFile::numElements, Dudley_ElementFile::numTagsInUse, Dudley_ElementFile::Owner, Dudley_ElementFile::Tag, and Dudley_ElementFile::tagsInUse.

Referenced by Dudley_ElementFile_allocTable(), and Dudley_ElementFile_free().

void Dudley_ElementFile_gather	(	dim_t *	,
		Dudley_ElementFile *	,
		Dudley_ElementFile *
	)

Referenced by Dudley_ElementFile_optimizeOrdering().

index_t Dudley_ElementFile_getFirstElement

(

Dudley_ElementFile *

in

)

References Dudley_ElementFile_setElementDistribution(), Dudley_ElementFile::MPIInfo, Esys_MPIInfo::rank, Esys_MPIInfo::size, TMPMEMALLOC, and TMPMEMFREE.

Referenced by Dudley_Mesh_saveVTK().

dim_t Dudley_ElementFile_getGlobalNumElements

(

Dudley_ElementFile *

in

)

References Dudley_ElementFile_setElementDistribution(), Dudley_ElementFile::MPIInfo, Esys_MPIInfo::size, TMPMEMALLOC, and TMPMEMFREE.

Referenced by Dudley_Mesh_saveVTK().

dim_t Dudley_ElementFile_getMyNumElements

(

Dudley_ElementFile *

in

)

References Dudley_ElementFile_setElementDistribution(), Dudley_ElementFile::MPIInfo, Esys_MPIInfo::rank, Esys_MPIInfo::size, TMPMEMALLOC, and TMPMEMFREE.

Referenced by Dudley_Mesh_saveVTK().

Dudley_ElementFile_Jacobeans* Dudley_ElementFile_Jacobeans_alloc

(

void

)

References Dudley_ElementFile_Jacobeans::absD, Dudley_ElementFile_Jacobeans::DSDX, Dudley_checkPtr(), DUDLEY_INITIAL_STATUS, MEMALLOC, Dudley_ElementFile_Jacobeans::numDim, Dudley_ElementFile_Jacobeans::numElements, Dudley_ElementFile_Jacobeans::numQuad, Dudley_ElementFile_Jacobeans::quadweight, and Dudley_ElementFile_Jacobeans::status.

Referenced by Dudley_ElementFile_alloc().

void Dudley_ElementFile_Jacobeans_dealloc

(

Dudley_ElementFile_Jacobeans *

)

References Dudley_ElementFile_Jacobeans::absD, Dudley_ElementFile_Jacobeans::DSDX, and MEMFREE.

Referenced by Dudley_ElementFile_free().

void Dudley_ElementFile_markDOFsConnectedToRange	(	index_t *	mask,
		index_t	offset,
		index_t	marker,
		index_t	firstDOF,
		index_t	lastDOF,
		index_t *	dofIndex,
		Dudley_ElementFile *	in,
		bool_t	useLinear
	)

References Dudley_ElementFile::Color, INDEX2, Finley_ElementFile::maxColor, Dudley_ElementFile::minColor, Dudley_ElementFile::Nodes, Dudley_ElementFile::numElements, and Dudley_ElementFile::numNodes.

Referenced by Dudley_Mesh_markDOFsConnectedToRange().

void Dudley_ElementFile_markNodes	(	dim_t *	,
		dim_t	,
		dim_t	,
		Dudley_ElementFile *	,
		dim_t
	)

Referenced by Dudley_Mesh_markNodes().

void Dudley_ElementFile_optimizeOrdering

(

Dudley_ElementFile **

in

)

References Dudley_checkPtr(), Dudley_ElementFile_alloc(), Dudley_ElementFile_allocTable(), Dudley_ElementFile_free(), Dudley_ElementFile_gather(), Dudley_noError(), Dudley_Util_sortValueAndIndex(), Dudley_Util_ValueAndIndex::index, INDEX2, MIN, Dudley_ElementFile::numElements, Finley_ElementFile::numNodes, TMPMEMALLOC, TMPMEMFREE, and Dudley_Util_ValueAndIndex::value.

Referenced by Dudley_Mesh_optimizeElementOrdering().

void Dudley_ElementFile_relableNodes	(	dim_t *	,
		dim_t	,
		Dudley_ElementFile *
	)

Referenced by Dudley_Mesh_relableElementNodes().

void Dudley_ElementFile_scatter	(	dim_t *	,
		Dudley_ElementFile *	,
		Dudley_ElementFile *
	)

void Dudley_ElementFile_setElementDistribution	(	Dudley_ElementFile *	in,
		dim_t *	distribution
	)

References Esys_MPIInfo::comm, MPI_INT, Dudley_ElementFile::MPIInfo, Dudley_ElementFile::numElements, Dudley_ElementFile::Owner, Esys_MPIInfo::rank, and Esys_MPIInfo::size.

Referenced by Dudley_ElementFile_getFirstElement(), Dudley_ElementFile_getGlobalNumElements(), and Dudley_ElementFile_getMyNumElements().

void Dudley_ElementFile_setNodeRange	(	dim_t *	,
		dim_t *	,
		Dudley_ElementFile *
	)

Referenced by Dudley_Mesh_resolveNodeIds().

void Dudley_ElementFile_setTags	(	Dudley_ElementFile *	,
		const	int,
		escriptDataC *
	)

References __const, Dudley_Assemble_reducedIntegrationOrder, Dudley_ElementFile_setTagsInUse(), Dudley_noError(), Dudley_resetError(), Dudley_setError(), getDataPointSize(), getSampleDataRO(), isExpanded(), Finley_ElementFile::numElements, numSamplesEqual(), and TYPE_ERROR.

Referenced by dudley::MeshAdapter::setTags().

void Dudley_ElementFile_setTagsInUse

(

Dudley_ElementFile *

in

)

References Dudley_noError(), Dudley_Util_setValuesInUse(), MEMFREE, Dudley_ElementFile::MPIInfo, Dudley_ElementFile::numElements, Dudley_ElementFile::numTagsInUse, Finley_ElementFile::numTagsInUse, Dudley_ElementFile::Tag, Dudley_ElementFile::tagsInUse, and Finley_ElementFile::tagsInUse.

Referenced by Dudley_ElementFile_setTags(), and Dudley_Mesh_setTagsInUse().